Computational Methods for Three-Dimensional Microscopy Reconstruction

1 Introduction.- 2 Interchanging geometry conventions in 3DEM: Mathematical context for the development of standards.- 3 Fully automated particle selection and verification in single-particle cryo-EM.- 4 Quantitative analysis in iterative classification schemes for cryo-EM applications.- 5 High-resolution cryo-EM structure of the Trypanosoma brucei ribosome of a case study.- 6 Computational methods for electron tomography of influenza virus.- 7 Reconstruction from microscopic projections with defocus-gradient and attenuation effects.- 8 Soft X-ray tomography imaging for biological samples.- 9 Using component trees to explore biological structures.